| Selection | Team | Player | Position |
|---|---|---|---|
| 1 | Harrisburg Senators | Albert Pujols | dh |
| 2 | Syracuse Comets | Roy Oswalt | sp |
| 3 | Baldwin Bombers | Ichiro Suzuki | rf |
| 4 | Atlanta Arrogants | Adam Dunn | dh |
| 5 | Harrisburg Senators | C.C. Sabathia | sp |
| 6 | Redlands Smog Storm | Jimmy Rollins | ss |
| 7 | Las Vegas DiamondBucks | Alfonso Soriano | lf |
| 8 | Upstate Ying Yangs | Juan Cruz | mr |
| 9 | Bourbonnais Blackbirds | Ben Sheets | sp |
| 10 | Boston Bulldogs | David Eckstein | 2b |
| 11 | Charleston Chiefs | Corey Patterson | lf |
| 12 | Harrisburg Senators | Jose Ortiz | 2b |
| 13 | Olympia Muscle | Bud Smith | sp |
| 14 | Castle Rock Fjords | Luis Rivas | ss |
| 15 | Starved Rock Magi | Toby Hall | c |
| 16 | Braidwood Blast | Danys Baez | mr |
| 17 | Harrisburg Senators | Joel Pineiro | sp |
| 18 | Atlanta Arrogants | Joe Kennedy | mr |
| 19 | Las Vegas DiamondBucks | Brian Lawrence | sp |
| 20 | Sioux City Soos | Victor Zambrano | sp |
| 21 | Harrisburg Senators | Brandon Duckworth | sp |
| 22 | Starved Rock Magi | Juan Uribe | 3b |
| 23 | Toronto Storm | Felipe Lopez | 3b |
| 24 | Los Angeles Hogheads | Shawn Chacon | sp |
| Selection | Team | Player | Position |
|---|---|---|---|
| 1 | Las Vegas DiamondBucks | Jay Gibbons | lf |
| 2 | Syracuse Comets | Dave Williams | sp |
| 3 | Baldwin Bombers | Josh Towers | sp |
| 4 | Miami Mercenaries | Chris Reitsma | mr |
| 5 | Sioux City Soos | Gary Glover | mr |
| 6 | Las Vegas DiamondBucks | Victor Santos | mr |
| 7 | Redlands Smog Storm | Luke Prokopec | sp |
| 8 | Upstate Ying Yangs | Craig Wilson | rf |
| 9 | Boston Bulldogs | Shea Hillenbrand | dh |
| 10 | Sioux City Soos | Bret Prinz | mr |
| 11 | Bourbonnais Blackbirds | Marcus Giles | 2b |
| 12 | Charleston Chiefs | Lance Davis | sp |
| 13 | Olympia Muscle | DAngelo Jimenez | ss |
| 14 | Los Angeles Hogheads | Jack Cressend | mr |
| 15 | Boston Bulldogs | Tsuyoshi Shinjo | cf |
| 16 | Braidwood Blast | Dave Coggin | sp |
| 17 | Syracuse Comets | Shawn Wooten | c |
| 18 | Rock Creek Disco Dancers | Aaron Rowand | cf |
| 19 | Harrisburg Senators | Chris George | sp |
| 20 | Bourbonnais Blackbirds | Tim Redding | sp |
| 21 | Harrisburg Senators | Jesus Colome | mr |
| 22 | Starved Rock Magi | Cesar Izturis | ss |
| 23 | Bourbonnais Blackbirds | Dee Brown | lf |
| 24 | Boston Bulldogs | Bob File | mr |
| Selection | Team | Player | Position |
|---|---|---|---|
| 1 | Rapid City Mudhens | Nelson Figueroa | sp |
| 2 | Syracuse Comets | Jeremy Fikac | mr |
| 3 | Baldwin Bombers | Brent Abernathy | 2b |
| 4 | Rapid City Mudhens | Ted Lilly | sp |
| 5 | Atlanta Arrogants | Erik Hiljus | sp |
| 6 | Mentone Beach Maulers | Rocky Biddle | cl |
| 7 | Rapid City Mudhens | Travis Phelps | mr |
| 8 | Upstate Ying Yangs | Rick Bauer | mr |
| 9 | Olympia Muscle | Chris Michalak | sp |
| 10 | Los Angeles Hogheads | Jose Antonio Nunez | mr |
| 11 | Bourbonnais Blackbirds | Jason Jennings | mr |
| 12 | Charleston Chiefs | Mark Little | cf |
| 13 | Rapid City Mudhens | Ryan Franklin | mr |
| 14 | Rapid City Mudhens | Scott Stewart | mr |
| 15 | Las Vegas DiamondBucks | Ryan Jensen | mr |
| 16 | Braidwood Blast | Adam Johnson | sp |
| 17 | Boston Bulldogs | Brian Buchanan | rf |
| 18 | Starved Rock Magi | Brad Wilkerson | rf |
| 19 | Boston Bulldogs | Gene Stechschulte | mr |
| 20 | Braidwood Blast | Jorge Julio | mr |
| 21 | Starved Rock Magi | Nick Bierbrodt | mr |
| 22 | Los Angeles Hogheads | Johnny Estrada | c |
| 23 | Mentone Beach Maulers | Willis Roberts | mr |
| 24 | Los Angeles Hogheads | Jerrod Riggan | mr |
| Selection | Team | Player | Position |
|---|---|---|---|
| 1 | Atlanta Arrogants | Casey Fossum | mr |
| 2 | Syracuse Comets | Rob Mackowiak | lf |
| 3 | Baldwin Bombers | Junior Spivey | 2b |
| 4 | Harrisburg Senators | Bobby Kielty | rf |
| 5 | Braidwood Blast | Wascar Serrano | mr |
| 6 | Redlands Smog Storm | Wes Helms | 3b |
| 7 | Castle Rock Fjords | Allen Levrault | mr |
| 8 | Upstate Ying Yangs | Jack Wilson | ss |
| 9 | Boston Bulldogs | Michael Young | 3b |
| 10 | Los Angeles Hogheads | Pedro Feliz | 3b |
| 11 | Charleston Chiefs | Joe Beimel | mr |
| 12 | Las Vegas DiamondBucks | Ben Weber | mr |
| 13 | Olympia Muscle | Sun-Woo Kim | mr |
| 14 | Rapid City Mudhens | Edwards Guzman | 3b |
| 15 | Rapid City Mudhens | Augie Ojeda | 2b |
| 16 | Braidwood Blast | Ryan Drese | sp |
| 17 | Mentone Beach Maulers | Juan Moreno | mr |
| 18 | Rock Creek Disco Dancers | Robert Ellis | sp |
| 19 | Boston Bulldogs | Hector Mercado | mr |
| 20 | Mentone Beach Maulers | Julio Zuleta | 1b |
| 21 | Harrisburg Senators | Brandon Inge | 2b |
| 22 | Castle Rock Fjords | Kyle Lohse | sp |
| 23 | Starved Rock Magi | Grant Roberts | mr |
| 24 | Los Angeles Hogheads | Jose Acevedo | mr |